Cytosplore

Description: The Cytosplore project forms a research framework on interactive visual analysis of high-dimensional data. The core is the Cytosplore software. Besides its application to single-cell analysis the Cytosplore software is a robust and extensible visual analysis framework for high-dimensional data. This project combines basic methodological research with highly relevant applied research in single-cell analysis.

If you are a student looking for a possible internship or thesis topic, we have several open projects and possibilities. Please see the section on the right for specific projects, but other possibilities can always be discussed in person. The projects can range from fundamental to very applied and can be focused on gathering practical experience or research. Projects can be at LUMC or in collaboration with the Computer Graphics and Visualization group at TU Delft.

LCBC Team Members


Thomas Höllt

Funding



Partial funding from NWO/STW project 12720 VAnPIRe

Related Publications


Rebecca D Hodge,  Trygve E Bakken,  Jeremy A Miller,  Kimberly A Smith,  Eliza R Barkan, et al.
Nature, 2019
Natasja L de Vries,  Vincent van Unen,  Marieke E Ijsselsteijn,  Tamim Abdelaal,  Ruud van der Breggen, et al.
Gut, 2019
Thomas Höllt Anna Vilanova Nicola Pezzotti Boudewijn Lelieveldt,  and Helwig Hauser
Computer Graphics Forum (Proceedings of EuroVis 2019), 2019
Thomas Höllt Nicola Pezzotti Vincent van Unen,  Na Li,  Frits Koning,  Elmar Eisemann Boudewijn Lelieveldt,  and Anna Vilanova
In Proceedings of Eurographics - Short Papers and Medical Prize Awards, 2019
 1st Prize, Dirk Bartz Prize for Visual Computing in Medicine 2019
Na Li,  Vincent van Unen,  Tamim Abdelaal,  Nannan Guo,  Sofya Kasatskaya, et al.
Nature Immunology, 2019
 Cover Image
Saskia J Santegoets,  Vanessa J van Ham,  Ilina Ehsan,  Pornpimol Charoentong,  Chantal L Duurland, et al.
Clinical Cancer Research, 2019
Guillaume Beyrend,  Koen Stam,  Thomas Höllt Ferry Ossendorp,  and Ramon Arens
Computational and Structural Biotechnology Journal, 2018
Sandra Laban,  Jessica S. Suwandi,  Vincent van Unen,  Jos Pool,  Joris Wesselius,  Thomas Höllt Nicola Pezzotti Anna Vilanova Boudewijn Lelieveldt,  and Bart O. Roep
PLOS one, 2018
Na Li,  Vincent van Unen,  Thomas Höllt Allan Thompson,  Jeroen van Bergen, et al.
Journal of Experimental Medicine, 2018
 Cover Image
Anke Redeker,  Ester Remmerswaal,  Esme van der Gracht,  Suzanne Welten,  Thomas Höllt,  et al.
Frontiers in Immunology, 2018
Thomas Höllt Nicola Pezzotti Vincent van Unen,  Frits Koning,  Boudewijn Lelieveldt,  and Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE InfoVis 2017), 2018
Vincent van Unen,  Thomas Höllt Nicola Pezzotti Na Li,  Marcel Reinders Elmar Eisemann Anna Vilanova Frits Koning,  and Boudewijn Lelieveldt
Nature Communications, 2017
 Selected talk @ BioVis/ISMB 2018
Thomas Höllt Nicola Pezzotti Vincent van Unen,  Frits Koning,  Elmar Eisemann Boudewijn Lelieveldt,  and Anna Vilanova
Computer Graphics Forum (Proceedings of EuroVis 2016), 2016
Vincent van Unen,  Na Li,  Ilse Molendijk,  Mine Temurhan,  Thomas Höllt,  et al.
Immunity, 2016
 LUMC Best Article Prize 2016 (non clinical)

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